PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G2837
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 636aa    MW: 67999.7 Da    PI: 5.2509
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G2837genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07276317548
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      T eE e+++d  + +G++ +++Ia+ +  ++t  +c+++++k l
      Gh_D05G2837 276 TSEEKEIFIDKLAAFGKD-FRKIASFLD-HKTTADCVEFYYKNL 317
                      89**************99.*********.************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.54E-11259319IPR009057Homeodomain-like
PROSITE profilePS5129312.579270321IPR017884SANT domain
SMARTSM007172.1E-5271319IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-4276318IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MKEKPPAAWS RPTPVPVADS GGRGVRVEAW AGGVADEEAT KFGLLHRLIR TGPLENSPVG  60
APLTSVVLLG GWHLFAKENG GHGFLPSHSG DKILGDESCH QSVSCSDSGD AAACVIPAAP  120
SGETTPRKKP CLGWGQGLAK YEKKKVECPD KSMNRVEATT SAGSTESSNS MSSNLADKSP  180
RVLGFSDCSS SATPSSVDCG SSPAQYLILE PSTVMINIAS KLLLDSNGRL YRIALKMPGL  240
VLDEKEEQVS RFISSNGLVE DPCAAEKERA LINPSTSEEK EIFIDKLAAF GKDFRKIASF  300
LDHKTTADCV EFYYKNLKSE CFERKKKLDL SKQGKSFMNT YLLTSRKKWS RDFNAASLDV  360
LGAASVITAH AENAMQNQKT SSGRIFIESH CNSRTSQFDD SIAKRSSSSE IIWKDEVAVA  420
ADVLAGICGS LSSKAMSSCI IGSADPGEAL PLDTGDACVL ESSVVCSKKL VSKMEDLPSS  480
IVSMDFDESD INREVSLQTD LNLSDEKNGR LIDHRDSEAV EAMVSDVGQT EPISEGVGDV  540
IVVDGSRAES VYVHRTAALA NLNAVRNHVA EQGPGVSIAV SGALGEAVDP CVSRLDTVLE  600
PKSDAGSGND WRQGKLHCPK MVWMNIIQNV VQTLAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C1e-13228323194NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D1e-13228323194NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007009785.11e-113Duplicated homeodomain-like superfamily protein isoform 1
TrEMBLA0A0B0PXR41e-173A0A0B0PXR4_G
STRINGVIT_13s0019g04010.t013e-88(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52602744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.14e-55MYB family protein